Table 1 List of E. col i NagC binding sites used for benchmarking
From: FITBAR: a web tool for the robust prediction of prokaryotic regulons
Binding sites | E. coli genes |
|---|---|
CTTATTTTATCATTCAAAAAATC | nagB |
TTTAATTTGCGATACGAATTAAA | nagE |
CTTAATTATCTTCGCGAATTATT | chbB distal |
GATATTTTACCTTTCGAAATTTC | man distal |
CATAATTCTCATCATGAAATATG | fimB2 |
GTTTATTCATTGATCGAAATAAG | glmU distal |
TGCAATTCGTGTCACAAAATATG | fimB1 |
CTTATTTCTCTTCGTAAAATTAC | ydeN1 proximal |
GTTGTTTATCGGCGAGAAATTAC | ydeN2 middle |
GATAATTCGCGTCGCGAAAAATA | ybfM proximal |