BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation

BMC Bioinformatics

Table 3 Microorganisms used in comparing BrEPS to PRIAM

Species	NCBI Accession	SOT size
		Strict	Loose
Corynebacterium glutamicum	NC_003450	97	273
Escherichia coli	NC_000913	1034	2476
Pseudomonas aeruginosa PAO1	NC_002516	368	742
Sulfolobus solfataricus	NC_002754	119	208
Thermus thermophilus	NC_005838	142	284

Table 3 shows the five microorganisms (with their NCBI Accession IDs) that were used to compare BrEPS and PRIAM. The size of the "Strict" and "Loose" standards of truth (SOT) we used is displayed on the right.

ISSN: 1471-2105