From: Haplotype association analyses in resources of mixed structure using Monte Carlo testing
 |  | CC* | TRIO# | ASP* | LP1# | LP2* | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  | EC | PC | TDT | EC | PC | TDT | EC | PC | EC | PC |
 | pedigree-informed null | NA | 0.046 | 0.044 | 0.045 | 0.052 | 0.051 | 0.051 | 0.049 | 0.047 | 0.054 | 0.054 |
 | pedigree-naïve null | 0.058 | 0.056 | 0.048 | 0.055 | 0.061 | 0.061 | 0.058 | 0.062 | 0.047 | 0.054 | 0.056 |
Freq risk hap | GRR | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
0.17 | 2.0 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 |
 | 1.5 | 0.910 | 0.840 | 0.846 | 0.846 | 0.904 | 0.914 | 0.916 | 0.970 | 0.974 | 0.900 | 0.892 |
 | 1.35 | 0.672 | 0.620 | 0.634 | 0.624 | 0.640 | 0.650 | 0.660 | 0.786 | 0.778 | 0.632 | 0.616 |
 | 1.2 | 0.280 | 0.276 | 0.290 | 0.282 | 0.256 | 0.264 | 0.264 | 0.358 | 0.364 | 0.254 | 0.268 |
0.10 | 2.0 | 0.994 | 0.994 | 0.994 | 0.994 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 |
 | 1.5 | 0.754 | 0.712 | 0.722 | 0.726 | 0.728 | 0.732 | 0.738 | 0.896 | 0.900 | 0.762 | 0.742 |
 | 1.35 | 0.456 | 0.422 | 0.434 | 0.428 | 0.378 | 0.406 | 0.408 | 0.604 | 0.572 | 0.448 | 0.428 |
 | 1.2 | 0.210 | 0.162 | 0.166 | 0.170 | 0.218 | 0.238 | 0.242 | 0.256 | 0.262 | 0.186 | 0.166 |
0.07 | 2.0 | 0.990 | 0.966 | 0.968 | 0.966 | 0.994 | 0.994 | 0.992 | 1.000 | 1.000 | 0.998 | 0.996 |
 | 1.5 | 0.642 | 0.574 | 0.586 | 0.596 | 0.620 | 0.646 | 0.642 | 0.820 | 0.822 | 0.688 | 0.666 |
 | 1.35 | 0.399 | 0.300 | 0.312 | 0.312 | 0.368 | 0.400 | 0.396 | 0.554 | 0.538 | 0.368 | 0.360 |
 | 1.2 | 0.168 | 0.146 | 0.161 | 0.166 | 0.143 | 0.151 | 0.154 | 0.252 | 0.252 | 0.146 | 0.140 |
0.04 | 2.0 | 0.855 | 0.777 | 0.798 | 0.794 | 0.867 | 0.886 | 0.880 | 0.992 | 0.986 | 0.928 | 0.920 |
 | 1.5 | 0.363 | 0.323 | 0.348 | 0.338 | 0.343 | 0.378 | 0.376 | 0.624 | 0.610 | 0.474 | 0.464 |
 | 1.35 | 0.245 | 0.158 | 0.184 | 0.174 | 0.196 | 0.236 | 0.230 | 0.304 | 0.317 | 0.241 | 0.211 |
 | 1.2 | 0.096 | 0.139 | 0.152 | 0.141 | 0.087 | 0.114 | 0.104 | 0.152 | 0.128 | 0.118 | 0.112 |