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Table 1 Core promoter elements, their consensus sequences and functional window

From: Computing DNA duplex instability profiles efficiently with a two-state model: trends of promoters and binding sites

Name

Consensus Sequence

Functional Window

TATA box

TATAWA

-33 to -23

Inr

YYANWYY

-5 to +6

DPE

RGWYV

+23 to +33

BRE

SSRCGCC

-42 to -32

GC box

GGGCGGG

-170 to -5

  1. Core promoter element motifs and functional windows, with the IUPAC convention of R = [GA], Y = [TC], W = [AT], S = [GC], V = [GCA] and N = [AGCT].
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BMC Bioinformatics

ISSN: 1471-2105

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