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Table 2 Number of MAQC data sets for which each estimator ranked in the top four.

From: Validation of differential gene expression algorithms: Application comparing fold-change estimation to hypothesis testing

algorithm

cross validation posterior

predictive expected loss

Wilcoxon stat. with emp. null

0

0

t stat. with emp. null

0

0

Wilcoxon stat. with locfdr

0

0

t stat. with locfdr

1

3

moderated t stat. with locfdr

3

3

moderated t stat. with limma

2

0

fold change shrinkage

0

0

Bayes factor

3

0

BIC

2

3

AICc

1

3

fold change > 1.41

0

0

fold change > 1

0

0

fold change > 2

0

0

all nulls true

0

0

all nulls false

0

0