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Table 3 Benchmark datasets performance

From: Multiple structure alignment and consensus identification for proteins

 

HOMSTRAD

SABmark

 

Average Core (%)

Average Core RMSD

Average Core (%)

Average Core RMSD

MAPSCI

70.99

0.83(n = 232)

48.89

1.00(n = 385)

MAMMOTH

66.74

0.83(n = 231)

44.55

0.99(n = 394)

MATT

63.79

0.85(n = 229)

47.88

0.99(n = 420)

  1. Statistics for the performance of the three methods on the benchmark datasets. The subscripts in the Average Core RMSD columns indicate how many values were used in computing the statistics, since the algorithms failed to compute a core for some of the data sets. For the Average Core (%) columns all reported values were used and therefore n = 232 and n = 425 for the HOMSTRAD and SABmark datasets, respectively.
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BMC Bioinformatics

ISSN: 1471-2105

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