Table 2 Log-likelihood-ratio scoring matrices
Gg/Hs Rfam 70% identity, 54% A+T | Tr/Hs Rfam 66% identity, 53% A+T | At/Os Rfam 69% identity, 55% A+T | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
a | c | g | t | a | c | g | t | a | c | g | t | |||
a | 86 | -110 | -48 | -94 | a | 87 | -93 | -49 | -79 | a | 79 | -92 | -57 | -69 |
c | -110 | 100 | -118 | -48 | c | -93 | 100 | -107 | -49 | c | -92 | 100 | -117 | -57 |
g | -48 | -118 | 100 | -110 | g | -49 | -107 | 100 | -93 | g | -57 | -117 | 100 | -92 |
t | -94 | -48 | -110 | 86 | t | -79 | -49 | -93 | 87 | t | -69 | -57 | -92 | 79 |
Gg/Hs TreeFam 65% identity, 49% A+T | Tr/Hs TreeFam 57% identity, 46% A+T | Sc/Sp TreeFam 49% identity, 60% A+T | ||||||||||||
a | c | g | t | a | c | g | t | a | c | g | t | |||
a | 100 | -99 | -46 | -113 | a | 100 | -75 | -38 | -92 | a | 71 | -55 | -28 | -60 |
c | -99 | 92 | -82 | -46 | c | -75 | 82 | -63 | -38 | c | -55 | 100 | -58 | -28 |
g | -46 | -82 | 92 | -99 | g | -38 | -63 | 82 | -75 | g | -28 | -58 | 100 | -55 |
t | -113 | -46 | -99 | 100 | t | -92 | -38 | -75 | 100 | t | -60 | -28 | -55 | 71 |