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Table 2 Performance achieved by considering and by neglecting surface information.

From: Predicting the protein-protein interactions using primary structures with predicted protein surface

 

Acc. (%)

Fm. (%)

Prec. (%)

Sens. (%)

Spec. (%)

Without surface information

     

   Shen et al.'s work

68.2 ± 4.3

70.4 ± 3.2

66.4 ± 5.1

75.4 ± 5.4

61.0 ± 10.2

Surface identified using different o

     

   1

72.3 ± 1.4

73.7 ± 1.6

70.3 ± 2.3

77.8 ± 4.4

66.9 ± 5.1

   2

72.1 ± 3.2

74.0 ± 2.2

69.7 ± 4.2

79.3 ± 3.7

64.9 ± 8.3

   3

74.1 ± 2.0

75.5 ± 2.0

71.8 ± 2.4

79.7 ± 3.5

68.6 ± 4.0

   4

71.7 ± 3.8

73.4 ± 2.3

69.8 ± 4.9

77.9 ± 5.9

65.4 ± 11.5

  1. Parameter o restricts the minimum number of surface residues in a surface sequence segment.