Table 1 The test of the structure prediction for the helical skeletons
From: Structure prediction for the helical skeletons detected from the low resolution protein density map
No | ID | #AAa | #hlcesb | #sticksc | #Possible Topologiesd | #Valid Topologiese | #Generated structuresf | Rankg | RMSDh | Prcti |
|---|---|---|---|---|---|---|---|---|---|---|
1 | 1DP3 | 55 | 3 | 3 | 48 | 6 | 3000 | 10 | 4.78 | 0.33% |
2 | 1A2T | 149 | 3 | 3 | 48 | 32 | 16000 | 15 | 3.72 | 0.09% |
3 | 1AIL | 73 | 3 | 3 | 48 | 16 | 8000 | 3 | 3.96 | 0.04% |
4 | 1BUU | 168 | 3 | 3 | 48 | 16 | 8000 | 27 | 4.67 | 0.34% |
5 | 1lRE | 81 | 3 | 3 | 48 | 18 | 9000 | 10 | 4.55 | 0.11% |
6 | 1BR0 | 120 | 3 | 3 | 48 | 4 | 2000 | 4 | 11.17 | 0.20% |
7 | 1B67 | 68 | 3 | 3 | 48 | 14 | 7000 | 17 | 4.03 | 0.24% |
8 | 1AYI | 87 | 4 | 3 | 192 | 48 | 24000 | 93 | 3.8 | 0.39% |
9 | 1BEA | 127 | 4 | 3 | 192 | 160 | 80000 | 572 | 4.75 | 0.72% |
10 | 1GXG | 85 | 4 | 3 | 192 | 40 | 20000 | 12 | 2.8 | 0.06% |
11 | 1NO1 | 126 | 4 | 3 | 192 | 120 | 60000 | 42 | 4.24 | 0.07% |
12 | 2EZH | 75 | 4 | 3 | 192 | 104 | 52000 | 47 | 4.2 | 0.09% |
13 | 1A3C | 181 | 4 | 3 | 192 | 48 | 24000 | 110 | 3.57 | 0.46% |
14 | 1A32 | 88 | 4 | 3 | 192 | 40 | 20000 | 9 | 3.69 | 0.05% |
15 | 1PZ4 | 116 | 4 | 3 | 192 | 72 | 36000 | 147 | 7.3 | 0.41% |
16 | 1LIH | 164 | 4 | 3 | 192 | 124 | 62000 | 114 | 5.48 | 0.18% |
17 | 1DXS | 80 | 5 | 3 | 480 | 450 | 225000 | 30 | 3.51 | 0.01% |
18 | 1SU0 | 159 | 5 | 3 | 480 | 96 | 48000 | 60 | 6.69 | 0.13% |
19 | 1BO9 | 73 | 6 | 3 | 960 | 438 | 219000 | 35 | 3.43 | 0.02% |
20 | 1JW2 | 72 | 4 | 4 | 384 | 66 | 33000 | 31 | 4.26 | 0.09% |
21 | 1I2T | 61 | 4 | 4 | 384 | 64 | 32000 | 21 | 5.58 | 0.07% |
22 | 1CCD | 77 | 4 | 4 | 384 | 20 | 10000 | 3 | 4.75 | 0.03% |
23 | 2PSR | 100 | 5 | 4 | 1920 | 468 | 234000 | 339 | 4.75 | 0.14% |
24 | 1A7D | 118 | 6 | 4 | 5760 | 139 | 69500 | 144 | 5.33 | 0.21% |
25 | 2LIS | 136 | 6 | 4 | 5760 | 144 | 72000 | 8 | 4.84 | 0.01% |
26 | 1ALU | 186 | 6 | 4 | 5760 | 419 | 209500 | 288 | 7.22 | 0.14% |
27 | 1HXI | 121 | 6 | 4 | 5760 | 400 | 200000 | 17 | 3.78 | 0.01% |
28 | 1JMW | 146 | 6 | 4 | 5760 | 304 | 152000 | 129 | 5.25 | 0.08% |
29 | 1AA2 | 108 | 7 | 4 | 13440 | 768 | 384000 | 3599 | 4.15 | 0.94% |
30 | 1BVC | 153 | 8 | 4 | 26880 | 1215 | 607500 | 8 | 5.59 | 0.00% |
31 | 1BZ4 | 144 | 5 | 5 | 3840 | 16 | 8000 | 31 | 4.91 | 0.39% |
32 | 1AEP | 161 | 5 | 5 | 3840 | 157 | 78500 | 204 | 5.3 | 0.26% |
33 | 1DUS | 194 | 6 | 5 | 23040 | 3840 | 1920000 | 2179 | 4.44 | 0.11% |
34 | 1B5L | 172 | 6 | 5 | 23040 | 438 | 219000 | 759 | 5.44 | 0.35% |
35 | 1FLP | 142 | 7 | 6 | 322560 | 7734 | 3867000 | 4707 | 4.65 | 0.12% |