Table 6 Predicted secreted proteins in rhizobia that have not been confirmed experimentally.
From: Computational prediction of type III secreted proteins from gram-negative bacteria
Gene ID | Annotation | Position of tts box | Motif e-value | SVM probability |
|---|---|---|---|---|
blr1704 | hypothetical protein | -67 ~ -31 | 2.30E-06 | 0.92 |
bll1648 | hypothetical protein | -260 ~ -224 | 9.60E-03 | 0.88 |
blr1854 | hypothetical protein | -66 ~ -30 | 6.10E-07 | 0.86 |
mlr5875 | hypothetical protein | -157 ~ -121 | 1.00E-02 | 0.86 |
mlr6331 | hypothetical protein | -81 ~ -45 | 2.10E-03 | 0.69 |
Smed_1170 | biotin-regulated protein | -107 ~ -71 | 8.30E-03 | 0.68 |
blr5999 | hypothetical protein | -693 ~ -657 | 7.00E-03 | 0.67 |
bll1840 | hypothetical protein | -74 ~ -38 | 5.60E-05 | 0.64 |
Smed_5711 | hypothetical protein | -606 ~ -570 | 0.0047 | 0.55 |
bll1796 | hypothetical protein | -930 ~ -894 | 1.40E-06 | 0.54 |
bll1804 | hypothetical protein | -102 ~ -66 | 7.50E-10 | 0.51 |
bll8244 | hypothetical protein | -188 ~ -152 | 9.80E-06 | 0.51 |
bll1636 | hypothetical protein | -657 ~ -621 | 3.10E-03 | 0.50 |
Smed_4857 | hypothetical protein | -826 ~ -790 | 0.0068 | 0.49 |
Smed_1856 | putative signal peptide protein | -299 ~ -263 | 2.80E-03 | 0.48 |
Smed_4485 | hypothetical protein | -637 ~ -601 | 0.005 | 0.4 |
bll0275 | hypothetical protein | -395 ~ -361 | 8.50E-03 | 0.38 |
bsr1999 | hypothetical protein | -264 ~ -227 | 4.20E-04 | 0.37 |
mlr3881 | hypothetical protein | -483 ~ -447 | 9.80E-03 | 0.36 |
blr0325 | hypothetical protein | -490 ~ -454 | 5.40E-03 | 0.35 |
mll5027 | hypothetical protein | -377 ~ -340 | 9.20E-03 | 0.35 |
bll1848 | hypothetical protein | -300 ~ -264 | 9.00E-08 | 0.34 |
bll5481 | hypothetical protein | -128 ~ -92 | 6.50E-03 | 0.33 |
mlr0825 | hypothetical protein | -535 ~ -499 | 5.70E-03 | 0.32 |
bsr8005 | hypothetical protein | -89 ~ -53 | 5.60E-03 | 0.31 |
mlr1025 | * | -764 ~ -728 | 8.60E-04 | 0.29 |
mlr7808 | hypothetical protein | -906 ~ -869 | 6.70E-03 | 0.29 |
Smed_0887 | hypothetical protein | -585 ~ -549 | 5.50E-03 | 0.27 |
blr6167 | hypothetical protein | -250 ~ -214 | 9.50E-03 | 0.27 |
msl5783 | hypothetical protein | -710 ~ -673 | 8.40E-03 | 0.25 |
Smed_1171 | peptidase M23B | -993 ~ -957 | 8.30E-03 | 0.23 |
bll5622 | hypothetical protein | -152 ~ -116 | 9.50E-03 | 0.19 |
bll1877 | hypothetical protein | -101 ~ -65 | 1.80E-08 | 0.13 |
Smed_5269 | hypothetical protein | -610 ~ -574 | 0.00014 | 0.12 |
blr1869 | hypothetical protein | -147 ~ -111 | 3.50E-08 | 0.1 |
Smed_0286 | hypothetical protein | -133 ~ -97 | 1.50E-04 | 0.09 |
blr0354 | hypothetical protein | -482 ~ -446 | 5.80E-03 | 0.09 |
bll1810 | hypothetical protein | -246 ~ -210 | 1.90E-07 | 0.08 |
bll1798 | hypothetical protein | -90 ~ -54 | 1.40E-06 | 0.08 |
bll1797 | hypothetical protein | -533 ~ -497 | 1.40E-06 | 0.04 |