Table 1 Dataset used in this study. 103 MHC class II molecules from 65 PDB files were used. #Mol -- Number of molecules; #PDB -- Number of PDB entries.
Alleles | Supertype[21] | #PDB | PDB Identifiers | #Mol |
|---|---|---|---|---|
DQA1*0102-DQB1*0602 | DQ1 | 1 | 1UVQ | 1 |
DQA1*0301/2/3-DQB1*0302 | DQ8 | 2 | 1JK8, 2NNA | 2 |
DQA1*0501/3/5/6/7/8/9-DQB1*0201/2 | DQ2 | 1 | 1S9V | 2 |
DRA*0101/2-DRB1*0101 | DR1 | 22 | 1AQD, 1DLH, 1FYT, 1HXY, 1JWM, 1JWS, 1JWU, 1KG0, 1KLG, 1KLU, 1LO5, 1PYW, 1SEB, 1SJE, 1SJH, 1T5W, 1T5X, 2FSE, 2G9H, 2IAM, 2IAN, 2IPK | 32 |
DRA*0101/2-DRB1*0301 | DR3 | 1 | 1A6A | 1 |
DRA*0101/2-DRB1*0401 | DR4 | 2 | 1J8H, 2SEB | 2 |
DRA*0101/2-DRB1*1501 | DR2 | 3 | 1BX2, 1YMM, 2WBJ | 5 |
DRA*0101/2-DRB3*0101 | DR52 | 1 | 2Q6W | 2 |
DRA*0101/2-DRB3*0301 | DR52 | 1 | 3C5J | 1 |
DRA*0101/2-DRB5*0101 | DR51 | 4 | 1FV1, 1H15, 1HQR, 1ZGL | 8 |
H2-Aa | -- | 1 | 1ES0 | 1 |
H2-Aa, H2-Ab1 | -- | 17 | 1D9K, 1F3J, 1IAK, 1IAO, 1JL4, 1K2D, 1LNU, 1MUJ, 1U3H, 2IAD, 2P24, 2PXY, 2Z31, 3C5Z, 3C60, 3C6L, 3CUP | 26 |
H2-Ea | -- | 2 | 1IEB, 1KTD | 4 |
H2-Ea, H2-Eb1 | -- | 7 | 1FNE, 1FNG, 1I3R, 1IEA, 1KT2, 1R5V, 1R5W | 16 |