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Table 3 Similarity scores between sub-pockets of HLA-DQ6.1 and HLA-DQ6.2. PMSMax and PMSMin are defined in Methods.

From: An automated framework for understanding structural variations in the binding grooves of MHC class II molecules

Peptide residue

Pocket

PMSMin

PMSMax

Leu3

P1

1.0

1.0

Thr6

P4

0.57

0.84

Val8

P6

0.90

0.90

Ser9

P7

1.0

1.0

Ala11

P9

0.92

0.92

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BMC Bioinformatics

ISSN: 1471-2105

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