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Table 1 Effect of physical properties on protein structure alignment with CMOS

From: Exploiting physical properties in protein structure alignment

Physical Property

% matches eliminated

% deviation from optimal

Average speed up in CMOS

Secondary Structures

24

0.8

5x

Torsion angles

28

14

N.A.

Hydropathy

12

7

N.A.

Solvent accessibility

42

16

N.A.