Table 1 Data field names and description of the SNP annotation summary database table.
From: Two new ArrayTrack libraries for personalized biomedical research
Field Name | Field Description |
|---|---|
chrom | Chromosome identifier |
BP_Start | Physical location start position in chromosome |
BP_End | Physical location end position in chromosome |
name | Reference SNP identifier (rs#) |
strand | DNA strand (+/-) containing the observed alleles |
observed | The sequences of the observed alleles |
molType | Sample type from exemplar submission |
class | The class of variant (single, in-del, insertion, microsatellite, etc) |
valid | The validation status of the SNP |
avHet | The average heterozygosity from all observations |
avHetSE | The Standard Error for the average heterozygosity |
func | The functional category (intron, synonymous, missense, etc) |
locType | How the variant affects the reference sequence |