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Table 1 Data field names and description of the SNP annotation summary database table.

From: Two new ArrayTrack libraries for personalized biomedical research

Field Name Field Description
chrom Chromosome identifier
BP_Start Physical location start position in chromosome
BP_End Physical location end position in chromosome
name Reference SNP identifier (rs#)
strand DNA strand (+/-) containing the observed alleles
observed The sequences of the observed alleles
molType Sample type from exemplar submission
class The class of variant (single, in-del, insertion, microsatellite, etc)
valid The validation status of the SNP
avHet The average heterozygosity from all observations
avHetSE The Standard Error for the average heterozygosity
func The functional category (intron, synonymous, missense, etc)
locType How the variant affects the reference sequence