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Table 2 The 20 highest scoring patterns sorted in descending order by sc_scor e.

From: Extraction of consensus protein patterns in regions containing non-proline cis peptide bonds and their functional assessment

Exact pattern discovery

Chemical equivalency set

Structural equivalency set

Pattern

sc_score

Log-likelihood

Pattern

sc_score

Log-likelihood

Pattern

sc_score

Log-likelihood

KPGKGR RK

1

-37.67

KPGKGR RK

1

-37.67

KPGKGR RK

1

-37.67

EDGTKE PLL

1

-42.25

G.[AG][DE].K..SL

1

-23.91

S.S[ITV]H..N

1

-19.73

HAESGE YGL

1

-44.51

[ILMV][ILMV].[AG].D.AT

1

-21.70

E.V[DLN].[KMR]P

1

-18.28

LGTV IN QL

1

-36.61

G[AG].[DE][ILMV]K.[ILMV]S[ILMV]

1

-31.33

MLQ...[ITV].[KMR]

1

-19.03

A DEAT

1

-20.01

G..[FY]W[QN]..D[ST]

1

-25.89

[EQ].G YT.R

1

-20.32

ALNALK LVT

1

-41.86

LGTV IN QL

1

-36.61

[KMR]..QGY..R

1

-20.23

YFT... I

1

-14.57

EDGTKE PLL

1

-42.25

EDGTKE PLL

1

-42.25

CLA.. VN

1

-20.96

GA. D[DE] A[ST]

1

-24.88

LGTV IN QL

1

-36.61

R..DP....VV

1

-20.01

A DEAT

1

-20.01

HAESGE YGL

1

-44.51

H.Y SQ

1

-15.76

[ST]..A[DE]G.A

1

-18.38

A DEAT

1

-20.01

VYL..L...Y

1

-20.29

[AG][ILMV]..L[KR] L..D

1

-20.11

ALNALK LVT

1

-41.86

N AW..D

1

-15.89

T.R.E..A.[ILMV]

1

-18.48

GG...[KMR] M..L

1

-19.48

A...KH F.G.G

1

-26.56

[ST].LN.L K[ILMV]

1

-23.04

[DLN]L.E L..E[EQ]

1

-20.75

L..SR GF

1

-19.77

[AG].HF[ILMV] GD

1

-24.32

[EQ]..P..[FHWY]P.E

1

-19.33

REPDP

1

-21.25

MLQ[QN]...[ILMV][KR]

1

-23.90

QL...N.L.[KMR][DLN]

1

-23.32

G.MFW

1

-16.96

[AG]KH F.G.G

1

-25.89

A[FHWY].[FHWY]E...EN

1

-24.56

L.G..V VP..S

1

-24.86

HAESGE YGL

1

-44.51

M[FHWY].[EQ][FHWY].D[ITV]

1

-23.90

M DHSNY

1

-28.88

[KR][ILMV].P.[ILMV][ST]..[FY]

1

-21.32

[ITV]..G[ITV].T.[ITV].V

1

-22.12

VL.G.. TNI

1

-25.03

[AG][ST].D.. GP

1

-18.86

[KMR]Y...N.V[CS]

1

-19.41

L..A.. V.SS

1

-18.77

G...M. C..I

1

-16.47

[FHWY]..KG.[ITV].R[ITV]

1

-23.29