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Table 2 The 20 highest scoring patterns sorted in descending order by sc_scor e.

From: Extraction of consensus protein patterns in regions containing non-proline cis peptide bonds and their functional assessment

Exact pattern discovery Chemical equivalency set Structural equivalency set
Pattern sc_score Log-likelihood Pattern sc_score Log-likelihood Pattern sc_score Log-likelihood
KPGKGR RK 1 -37.67 KPGKGR RK 1 -37.67 KPGKGR RK 1 -37.67
EDGTKE PLL 1 -42.25 G.[AG][DE].K..SL 1 -23.91 S.S[ITV]H..N 1 -19.73
HAESGE YGL 1 -44.51 [ILMV][ILMV].[AG].D.AT 1 -21.70 E.V[DLN].[KMR]P 1 -18.28
LGTV IN QL 1 -36.61 G[AG].[DE][ILMV]K.[ILMV]S[ILMV] 1 -31.33 MLQ...[ITV].[KMR] 1 -19.03
A DEAT 1 -20.01 G..[FY]W[QN]..D[ST] 1 -25.89 [EQ].G YT.R 1 -20.32
ALNALK LVT 1 -41.86 LGTV IN QL 1 -36.61 [KMR]..QGY..R 1 -20.23
YFT... I 1 -14.57 EDGTKE PLL 1 -42.25 EDGTKE PLL 1 -42.25
CLA.. VN 1 -20.96 GA. D[DE] A[ST] 1 -24.88 LGTV IN QL 1 -36.61
R..DP....VV 1 -20.01 A DEAT 1 -20.01 HAESGE YGL 1 -44.51
H.Y SQ 1 -15.76 [ST]..A[DE]G.A 1 -18.38 A DEAT 1 -20.01
VYL..L...Y 1 -20.29 [AG][ILMV]..L[KR] L..D 1 -20.11 ALNALK LVT 1 -41.86
N AW..D 1 -15.89 T.R.E..A.[ILMV] 1 -18.48 GG...[KMR] M..L 1 -19.48
A...KH F.G.G 1 -26.56 [ST].LN.L K[ILMV] 1 -23.04 [DLN]L.E L..E[EQ] 1 -20.75
L..SR GF 1 -19.77 [AG].HF[ILMV] GD 1 -24.32 [EQ]..P..[FHWY]P.E 1 -19.33
REPDP 1 -21.25 MLQ[QN]...[ILMV][KR] 1 -23.90 QL...N.L.[KMR][DLN] 1 -23.32
G.MFW 1 -16.96 [AG]KH F.G.G 1 -25.89 A[FHWY].[FHWY]E...EN 1 -24.56
L.G..V VP..S 1 -24.86 HAESGE YGL 1 -44.51 M[FHWY].[EQ][FHWY].D[ITV] 1 -23.90
M DHSNY 1 -28.88 [KR][ILMV].P.[ILMV][ST]..[FY] 1 -21.32 [ITV]..G[ITV].T.[ITV].V 1 -22.12
VL.G.. TNI 1 -25.03 [AG][ST].D.. GP 1 -18.86 [KMR]Y...N.V[CS] 1 -19.41
L..A.. V.SS 1 -18.77 G...M. C..I 1 -16.47 [FHWY]..KG.[ITV].R[ITV] 1 -23.29