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Table 2 Some associations masked by unfaithfulness from the WTCCC data set.

From: A hidden two-locus disease association pattern in genome-wide association studies

Disease SNP X p Single-locus
P-value
SNP X q Single-locus
P-value
Chr Gene Unfaithfulness
P-value
BD rs668860 0.053 rs10873672 0.245 1 MCOLN2 4.885 × 10-15
  rs668860 0.053 rs6691970 0.216 1 MCOLN2 6.217 × 10-15
CAD rs7162070 0.867 rs16969478 0.160 15 FSIP1 5.551 × 10-15
  rs1876853 0.903 rs16969478 0.160 15 FSIP1 2.310 × 10-13
  rs8029602 0.853 rs16969478 0.160 15 FSIP1 5.274 × 10-14
  rs16969475 0.823 rs16969478 0.160 15 FSIP1 1.259 × 10-13
T1D rs1058318 0.074 rs2252745 0.840 6 GNL1, PPP1R10 1.326 × 10-12
HT rs2300390 0.460 rs12482676 0.061 21 RCAN1 2.442 × 10-15