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Table 3 Regression coefficients of those associations listed in Table 2.

From: A hidden two-locus disease association pattern in genome-wide association studies

Disease

SNP X p

(z Value)

SNP X q

(z Value)

r 2

β1(z Value)

β2(z Value)

BD

rs668860

0.0162 (0.392)

rs10873672

0.0679 (1.662)

0.961

-1.379 (-5.823)

1.402 (5.989)

 

rs668860

0.0162 (0.392)

rs6691970

0.0706 (1.728)

0.958

-1.397 (-5.934)

1.421 (6.107)

CAD

rs7162070

0.0301 (0.482)

rs16969478

-0.108 (-1.732)

0.913

2.621 (5.671)

-2.637 (-5.720)

 

rs1876853

0.0208 (0.331)

rs16969478

-0.108 (-1.732)

0.913

2.354 (5.538)

-2.372 (-5.603)

 

rs8029602

0.0175 (0.281)

rs16969478

-0.108 (-1.732)

0.914

2.214 (5.594)

-2.238 (-5.676)

 

rs16969475

0.0184 (0.294)

rs16969478

-0.108 (-1.732)

0.913

2.110 (5.660)

-2.132 (-5.746)

T1D

rs1058318

0.0992 (2.269)

rs2252745

-0.0167 (-0.375)

0.887

1.0292 (7.530)

-1.005 (-7.219)

HT

rs2300390

-0.0600 (-1.182)

rs12482676

0.0531 (1.037)

0.903

-1.215 (-6.567)

1.224 (6.577)

  1. Here we assume additive effects in regression.