From: RAPSearch: a fast protein similarity search tool for short reads
Test datasets | Number of reads | Read length (nt) | Reads with homologs (by BLAST) | Running time (CPU hours) | Reads with homologs found in the IMG protein databasea | |||
---|---|---|---|---|---|---|---|---|
 |  |  |  | BLAST | RAPSearch | Overlap g | BLAST-only | RAPSearch-only |
SRR020796 (2%) b | 1,164,805 | 72 | 19%e | 1,590 f | 16.8 | 218,134 (98.4%) | 2,832 (1.3%) | 745 (0.3%) |
4440037c | 188,445 | 100 | 5% | 154 | 3.5 | 9,791 (95.3%) | 270 (2.6%) | 213 (2.1%) |
TS50d | 622,554 | 200 | 75% | 1000 | 54.3 | 459,509 (97.9%) | 7,339 (1.5%) | 2683 (0.6%) |
TS28d | 312,665 | 329 | 75% | 900 | 45.7 | 225,953 (96%) | 7,511 (3.2%) | 1,222 (0.5%) |