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Table 10 The mean MCC and BDT raw scores and Z-scores obtained by FunFOLD are compared with those obtained by the top CASP9 function prediction groups - as in Table 9 except for CASP9 targets containing only metal ligands, with a minimum of 6 predictions in common.

From: FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

Group ID N Mean score for group Mean score for FunFOLD Difference in mean score Mean Z-score for group Mean Z-score for FunFOLD P-value
(raw score)
P-value
(Z-score)
1 - p-value
(raw score)
1 - p-value
(Z-score)
   MCC BDT MCC BDT MCC BDT MCC BDT MCC BDT MCC BDT MCC BDT MCC BDT MCC BDT
FN114 6 0.642 0.560 0.408 0.343 -0.234 -0.217 0.602 0.777 -0.264 -0.275 0.947 0.970 0.911 0.947 0.053 0.030 0.089 0.053
FN094 6 0.651 0.521 0.530 0.428 -0.122 -0.092 0.555 0.551 0.210 0.159 0.860 0.860 0.791 0.860 0.140 0.140 0.209 0.140
FN452 6 0.626 0.518 0.492 0.397 -0.134 -0.121 0.417 0.491 -0.079 -0.104 0.911 0.860 0.911 0.911 0.089 0.140 0.089 0.089
FN242 7 0.540 0.438 0.450 0.367 -0.089 -0.071 0.381 0.369 -0.063 -0.004 0.911 0.736 0.911 0.799 0.089 0.265 0.089 0.201
FN339 7 0.536 0.424 0.450 0.367 -0.085 -0.057 0.345 0.406 -0.063 -0.004 0.853 0.735 0.799 0.896 0.147 0.265 0.201 0.104
FN096 7 0.562 0.420 0.450 0.367 -0.112 -0.053 0.258 0.207 -0.063 -0.004 0.853 0.663 0.735 0.853 0.147 0.337 0.265 0.147
FN236 7 0.470 0.369 0.450 0.367 -0.019 -0.002 -0.009 -0.065 -0.063 -0.004 0.606 0.606 0.606 0.500 0.394 0.394 0.394 0.500
FN057 6 0.371 0.250 0.530 0.428 0.158 0.178 -0.565 -0.770 0.210 0.159 0.109 0.031 0.156 0.031 0.891 0.969 0.844 0.969
FN072 6 0.360 0.239 0.530 0.428 0.170 0.189 -0.571 -0.817 0.210 0.159 0.109 0.047 0.156 0.031 0.891 0.953 0.844 0.969
FN425 7 0.281 0.226 0.450 0.367 0.169 0.142 -0.626 -0.546 -0.063 -0.004 0.209 0.089 0.109 0.140 0.791 0.911 0.791 0.860
FN017 6 0.233 0.201 0.530 0.428 0.297 0.227 -1.143 -1.008 0.210 0.159 0.031 0.016 0.031 0.016 0.969 0.984 0.969 0.984
FN415 6 0.197 0.172 0.530 0.428 0.333 0.256 -1.356 -1.214 0.210 0.159 0.031 0.016 0.031 0.016 0.969 0.984 0.969 0.984