From: Efficient alignment of pyrosequencing reads for re-sequencing applications
HS1 | HS2 | HS3 | ||||
---|---|---|---|---|---|---|
time | % accuracy | time | % accuracy | time | % accuracy | |
BWA-SW | 1358s | 99.32 | 1269s | 98.81 | 1212s | 94.10 |
SSAHA2 | 5044s | 99.86 | 4328s | 99.86 | 4121s | 99.18 |
Newbler | 1192s | 99.99 | 6066s | 95.53 | 7260s | 83.25 |
Segemehl | 3824s | 99.99 | 6823s | 99.95 | 6299s | 98.81 |
GASSST | 855s | 99.47 | 794s | 99.27 | 693s | 97.35 |
TAPyR 50 | 63s | 99.99 | 113s | 99.78 | 239s | 98.20 |