Table 3 PSR and FDR for Gene subset identification of different methods
From: Pathway-based analysis using reduced gene subsets in genome-wide association studies
Methods | TNFR2 Signaling Pathway (pattern 1) | Fructose and mannose metabolism (pattern 2) | Cytokine-cytokine receptor interaction (pattern 3) | |||
|---|---|---|---|---|---|---|
| Â | PSR | FDR | PSR | FDR | PSR | FDR |
FPC_AIC | 0.880 | 0.524 | 0.473 | 0.665 | 0.535 | 0.739 |
FPC_BIC | 0.318 | 0.031 | 0.243 | 0.093 | 0.192 | 0.090 |
Gene-test | 0.310 | 0.024 | 0.185 | 0.075 | 0.085 | 0.025 |