Table 5 Functional annotation of the top ten superfamilies that have either the largest number of HMM representations or CCs.
From: A Network of SCOP Hidden Markov Models and Its Analysis
Superfamily ID | # of HMMs | # of CCs | Functional annotation |
|---|---|---|---|
c.37.1 | 358 | 3 | P-loop containing nucleoside triphosphate hydrolases |
b.1.1 | 286 | 6 | Immunoglobulin |
c.2.1 | 267 | 2 | NAD(P)-binding Rossmann-fold domains |
a.4.5 | 150 | 20 | Winged helix DNA-binding domain |
c.47.1 | 147 | 4 | Thioredoxin-like |
c.1.8 | 141 | 7 | (Trans)glycosidases |
c.66.1 | 119 | 2 | S-adenosyl-L-methionine-dependent methyltransferases |
a.4.1 | 110 | 8 | Homeodomain-like |
c.69.1 | 106 | 1 | alpha/beta-Hydrolases |
b.1.2 | 98 | 2 | Fibronectin type III |
Superfamily ID | # of CCs | # of HMMs | Functional annotation |
a.4.5 | 20 | 150 | Winged helix DNA-binding domain |
b.1.18 | 17 | 76 | E set domains |
b.40.4 | 16 | 95 | Nucleic acid-binding proteins |
b.29.1 | 14 | 97 | Concanavalin A-like lectins/glucanases |
d.14.1 | 11 | 52 | Ribosomal protein S5 domain 2-like |
g.39.1 | 10 | 83 | Glucocorticoid receptor-like (DNA-binding domain) |
b.18.1 | 10 | 54 | Galactose-binding domain-like |
d.3.1 | 10 | 54 | Cysteine proteinases |
a.4.1 | 8 | 110 | Homeodomain-like |
b.121.4 | 8 | 58 | Positive stranded ssRNA viruses |