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Table 3 Assessment on impact of compactness factor (CF)

From: MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries

PDB_ID

FDT (6.5 Ã…)

CF(0.73 ± 0.06)

 

Average CF *

Execution time (s)

TP / PE

Average CF

Execusion time (s)

TP / PE

1JRH

0.825

9

19/39

0.729

8

20/31

1BJ1

0.754

22

14/36

0.722

13

15/36

1G9M

0.79

402

9/50

0.719

128

9/50

1E6J

0.794

226

8/39

0.734

121

11/42

1N8Z

0.788

3147

17/37

0.713

234

18/38

1N8Z*

0.788

4845

17/37

0.713

359

18/38

1IQD

0.754

302

9/39

0.739

124

9/39

1YY9

0.822

897

0/43

0.720

128

0/43

2ADF

0.777

28

0/31

0.732

11

12/35

1ZTX

0.730

44

14/39

0.738

62

14/39

3IU3

0.828

14

11/31

0.773

13

4/24

2GHW

0.972

2466

13/37

0.756

433

13/37

2NY7

0.872

735

2/43

0.783

297

3/30

1AVZ

0.867

209

0/43

0.742

40

11/32

1HX1

0.861

374

10/35

0.729

62

16/38

1SQ0

0.65

12

6/32

0.75

18

8/34

1MQ8

0.73

2

7/30

0.75

4

7/30

1II4

0.74

31

23/41

0.76

35

23/41

  1. * Average CF is calculated as the mean value of CF s from all the graphs generated from each surface patch.