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Table 3 Assessment on impact of compactness factor (CF)

From: MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries

PDB_ID FDT (6.5 Å) CF(0.73 ± 0.06)
  Average CF * Execution time (s) TP / PE Average CF Execusion time (s) TP / PE
1JRH 0.825 9 19/39 0.729 8 20/31
1BJ1 0.754 22 14/36 0.722 13 15/36
1G9M 0.79 402 9/50 0.719 128 9/50
1E6J 0.794 226 8/39 0.734 121 11/42
1N8Z 0.788 3147 17/37 0.713 234 18/38
1N8Z* 0.788 4845 17/37 0.713 359 18/38
1IQD 0.754 302 9/39 0.739 124 9/39
1YY9 0.822 897 0/43 0.720 128 0/43
2ADF 0.777 28 0/31 0.732 11 12/35
1ZTX 0.730 44 14/39 0.738 62 14/39
3IU3 0.828 14 11/31 0.773 13 4/24
2GHW 0.972 2466 13/37 0.756 433 13/37
2NY7 0.872 735 2/43 0.783 297 3/30
1AVZ 0.867 209 0/43 0.742 40 11/32
1HX1 0.861 374 10/35 0.729 62 16/38
1SQ0 0.65 12 6/32 0.75 18 8/34
1MQ8 0.73 2 7/30 0.75 4 7/30
1II4 0.74 31 23/41 0.76 35 23/41
  1. * Average CF is calculated as the mean value of CF s from all the graphs generated from each surface patch.