Table 2 Comparison of performance between NCACO-score and other potential functions on Decoys'R'Us sets.
From: NCACO-score: An effective main-chain dependent scoring function for structure modeling
| Â | Â | RAPDF | Atomic KBP | DFIRE-A | DFIRE-B | PC2CA | DFMAC | NCACO-score | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Size a | Rank b | Z-score c | Rank | Z-score | Rank | Z-score | Rank | Z-score | Rank | Z-score | C.C. d | Rank | Z-score | C.C. | Rank | Z-score | C.C. |
4state_reduced | ||||||||||||||||||
1ctf | 630 | 1 | -3.26 | 1 | -3.53 | 1 | -3.86 | 1 | -3.03 | 1 | -3.4 | 0.59 | 1 | -4.49 | 0.82 | 1 | -5.48 | 0.73 |
1r69 | 676 | 1 | -3.49 | 1 | -3.76 | 1 | -4.23 | 1 | -2.95 | 1 | -4 | 0.62 | 1 | -3.34 | 0.82 | 1 | -4.47 | 0.64 |
1sn3 | 660 | 1 | -3.26 | 1 | -3.5 | 1 | -3.79 | 1 | -3.4 | 1 | -3.6 | 0.36 | 1 | -3.14 | 0.55 | 1 | -4.73 | 0.46 |
2cro | 673 | 1 | -2.93 | 1 | -2.91 | 1 | -3.29 | 2 | -2.74 | 1 | -3.2 | 0.69 | 1 | -3.17 | 0.82 | 1 | -4.36 | 0.59 |
3icb | 654 | 1 | -2.22 | 1 | -2.41 | 4 | -2.28 | 24 | -1.68 | 1 | -2.9 | 0.76 | 1 | -2.01 | 0.86 | 1 | -3.33 | 0.78 |
4pti | 686 | 1 | -3.12 | 1 | -3.47 | 1 | -3.62 | 1 | -3.15 | 1 | -3.1 | 0.40 | 1 | -4.3 | 0.52 | 1 | -6.1 | 0.39 |
4rxn | 677 | 1 | -2.79 | 1 | -3.12 | 1 | -3.33 | 19 | -1.88 | 667 | 2.5 | 0.48 | 1 | -2.9 | 0.67 | 1 | -4.22 | 0.47 |
Average | Â | 1.00 | -3.01 | 1.00 | -3.24 | 1.43 | -3.49 | 7.00 | -2.69 | 96.14 | -2.53 | 0.56 | 1.00 | -3.34 | 0.72 | 1.00 | -4.67 | 0.58 |
fisa | ||||||||||||||||||
1fc2 | 501 | 497 | 2.74 | 413 | 1.05 | 254 | -0.23 | 1 | -2.76 | 1 | -6.6 | 0.11 | 399 | 0.77 | 0.50 | 461 | 1.68 | 0.44 |
1hdd-C | 501 | 17 | -2 | 25 | -1.78 | 1 | -4.5 | 1 | -6.76 | 1 | -8.4 | 0.24 | 1 | -4.81 | 0.39 | 21 | -1.55 | 0.33 |
2cro | 501 | 14 | -1.93 | 24 | -1.64 | 1 | -6.33 | 1 | -7.84 | 1 | -7.3 | 0.17 | 1 | -4.19 | 0.28 | 3 | -2.43 | 0.26 |
4icb | 500 | 1 | -3.89 | 6 | -2.46 | 1 | -6.91 | 1 | -8.47 | 1 | -9.3 | 0.23 | 1 | -5.1 | 0.25 | 1 | -4.43 | 0.23 |
Average | Â | 132.25 | -1.27 | 117.00 | -1.21 | 64.25 | -4.49 | 1.00 | -6.46 | 1.00 | -7.90 | 0.19 | 100.50 | -3.33 | 0.36 | 121.50 | -1.68 | 0.32 |
fisa_casp3 | ||||||||||||||||||
1bg8-A | 1200 | 1 | -4.39 | 2 | -2.84 | 1 | -5.35 | 1 | -3.82 | 1 | -4.5 | 0.26 | 14 | -2.21 | 0.35 | 44 | -1.69 | 0.17 |
1bl0 | 972 | 1 | -3.19 | 215 | -0.76 | 1 | -4.5 | 3 | -2.27 | 1 | -3.1 | -0.09 | 8 | -2.17 | 0.30 | 3 | -2.46 | 0.38 |
1jwe | 1407 | 1 | -4.69 | 4 | -2.64 | 1 | -6.26 | 1 | -4.81 | 1 | -5.6 | 0.10 | 1 | -2.76 | 0.00 | 6 | -2.33 | -0.09 |
Average | Â | 1.00 | -4.09 | 73.67 | -2.08 | 1.00 | -5.37 | 1.67 | -3.63 | 1.00 | -4.40 | 0.09 | 7.67 | -2.38 | 0.22 | 17.67 | -2.16 | 0.15 |
lmds | ||||||||||||||||||
1b0n-B | 498 | 359 | 0.45 | 74 | -1.03 | 430 | 1.17 | 261 | -0.03 | 1 | -3.3 | 0.05 | 1 | -2.82 | 0.07 | 1 | -2.56 | 0.19 |
1bba | 501 | 501 | 11.11 | 500 | 3.51 | 501 | 16.28 | 501 | 21.38 | 501 | 21.4 | -0.23 | 501 | 4.38 | 0.18 | 497 | 2.02 | 0.24 |
1ctf | 496 | 1 | -2.84 | 1 | -3.45 | 1 | -3.54 | 1 | -2.77 | 1 | -3.4 | 0.31 | 1 | -6.04 | 0.27 | 1 | -6.28 | 0.12 |
1dtk | 216 | 116 | 0.08 | 31 | -1.16 | 1 | -2.62 | 5 | -2.46 | 2 | -2.5 | 0.21 | 70 | -0.38 | 0.04 | 8 | -1.64 | 0.16 |
1fc2 | 501 | 501 | 7.75 | 501 | 8.86 | 501 | 5.72 | 441 | 1.22 | 53 | -1.3 | 0.17 | 501 | 2.94 | 0.08 | 113 | -0.71 | 0.01 |
1igd | 501 | 1 | -4.21 | 1 | -4.16 | 1 | -5.16 | 1 | -4.69 | 1 | -4 | 0.10 | 1 | -7.21 | 0.25 | 1 | -4.38 | 0.19 |
1shf-A | 437 | 1 | -5.15 | 2 | -2.83 | 1 | -6.68 | 1 | -5.44 | 1 | -5.3 | 0.11 | 1 | -4.28 | 0.06 | 1 | -3.92 | 0.02 |
2cro | 501 | 416 | 0.96 | 175 | -0.4 | 1 | -4.7 | 1 | -4.5 | 1 | -7.7 | 0.13 | 1 | -3.04 | 0.07 | 1 | -5.58 | 0.06 |
2ovo | 348 | 4 | -2.76 | 1 | -2.86 | 1 | -3.21 | 27 | -1.48 | 1 | -3.2 | 0.11 | 1 | -2.73 | 0.16 | 1 | -6.6 | 0.15 |
4pti | 344 | 157 | -0.2 | 13 | -1.75 | 1 | -3.96 | 1 | -3.47 | 1 | -3.5 | 0.02 | 3 | -2.57 | 0.10 | 1 | -3.48 | 0.17 |
Average | Â | 205.70 | 0.52 | 129.90 | -0.53 | 143.90 | -0.67 | 124.00 | -0.22 | 56.30 | -1.28 | 0.10 | 108.10 | -2.18 | 0.13 | 62.50 | -3.31 | 0.13 |
lattice_ssfit | ||||||||||||||||||
1beo | 1998 | 1 | -9.79 | 1 | -9.47 | 1 | -12.09 | 1 | -7.95 | 1 | -5.6 | 0.08 | 1 | -8.37 | 0.04 | 1 | -13.89 | 0.08 |
1ctf | 1999 | 1 | -6.99 | 1 | -7.2 | 1 | -10.05 | 1 | -6.89 | 1 | -6 | 0.03 | 1 | -10.22 | 0.01 | 1 | -13.75 | 0.10 |
1dkt-A | 1995 | 1 | -6.78 | 1 | -6.78 | 1 | -6.87 | 1 | -4.92 | 1 | -3.1 | -0.01 | 1 | -7.35 | -0.05 | 1 | -8.07 | 0.02 |
1fca | 2001 | 1 | -5.57 | 1 | -3.36 | 1 | -7.18 | 1 | -5.3 | 1 | -4.7 | 0.04 | 1 | -9.31 | 0.01 | 1 | -7.74 | 0.09 |
1nkl | 1995 | 1 | -8.33 | 1 | -8.16 | 1 | -9.29 | 1 | -5.83 | 1 | -4.1 | 0.01 | 1 | -5.18 | -0.09 | 1 | -6.36 | -0.14 |
1pgb | 1997 | 1 | -8.42 | 1 | -6.86 | 1 | -11.87 | 1 | -9.64 | 1 | -4.7 | 0.04 | 1 | -13.65 | 0.14 | 1 | -16.66 | 0.13 |
1trl-A | 1999 | 1 | -4.84 | 1 | -5.58 | 1 | -6.32 | 1 | -3.73 | 1 | -3.6 | 0.02 | 1 | -4.09 | -0.02 | 1 | -7.58 | 0.01 |
4icb | 1998 | 1 | -6.68 | 1 | -5.65 | 1 | -7.81 | 1 | -4.25 | 1 | -4.4 | 0.00 | 1 | -5.98 | -0.02 | 1 | -8.73 | -0.02 |
Average | Â | 1.00 | -7.18 | 1.00 | -6.63 | 1.00 | -8.94 | 1.00 | -6.06 | 1.00 | -4.53 | 0.03 | 1.00 | -8.02 | 0.00 | 1.00 | -10.35 | 0.03 |
Summary | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Average | Â | 81.38 | -2.83 | 62.59 | -2.88 | 53.66 | -4.27 | 40.81 | -3.32 | 39.09 | -3.48 | 0.19 | 47.53 | -4.05 | 0.26 | 36.84 | -5.06 | 0.23 |