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Table 2 Summary of all F-statistics for chromosome 22 from performing analysis of variance (ANOVA) on the locus-level copy number data by 96-well plate; there were 23 plates utilized in the GENOA study

From: Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform

 

Quantile

Software

0% (Min)

25%

50% (Median)

75%

100% (Max)

PennCNV

0.866

21.600

32.580

47.830

224.000

Aroma.Affymetrix

0.547

2.558

2.590

4.929

19.120

APT

0.463

2.614

3.650

5.052

19.040

CLRMM

1.165

19.840

29.830

44.390

203.400

  1. The ANOVA provides an F-statistic with 22 and 1417 degrees of freedom for each locus; the associated critical value for the 0.999 quantile is 2.21595.
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BMC Bioinformatics

ISSN: 1471-2105

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