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Figure 2 | BMC Bioinformatics

Figure 2

From: Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences

Figure 2

Distance measure (DM) calculation. Along each protein, the distance is the maximum difference between start and end positions (startA lab - startA PS , endA lab - endA PS ). When the predicted site is contained within the lab site, the differences are both negative and we clamp the maximum difference at 0 (perfect match). Distances along each protein are scaled and combined vectorially to yield the DM.

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BMC Bioinformatics

ISSN: 1471-2105

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