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Table 1 Average AUC values for AFX data

From: Evaluating methods for ranking differentially expressed genes applied to microArray quality control data

Technology TAQ TAQ TAQ TAQ GEX GEX GEX GEX
Comparison AB AB CD CD AB AB CD CD
Metric FDR AD FDR AD FDR AD FDR AD
#DEGs 817 553 767 351 144 106 114 60
WAD 69.91 75.74 71.41 77.69 75.74 78.75 76.54 80.69
AD 67.73 77.45 69.19 81.24 70.77 76.60 71.26 78.96
FC 67.73 77.44 69.17 81.20 70.79 76.61 71.35 78.95
RP 67.37 77.43 68.85 81.78 70.61 76.36 71.19 79.46
modT 68.74 76.98 70.19 79.95 73.12 77.67 73.53 80.77
samT 67.96 77.52 69.49 81.05 71.26 76.87 71.93 79.61
shrT 68.64 77.11 70.16 80.08 72.90 77.64 73.39 80.68
ibmT 69.26 76.85 70.70 79.57 74.27 78.26 74.87 81.33
  1. Average AUC values across six test sites. Highest AUC values for each case are in bold. A total of 8 cases (2 assay technologies × 2 comparisons × 2 metrics) are shown. For example, AUC value for samT (77.52) was the highest in TAQ_AB_AD case, where 553 genes were defined as DEGs.