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Table 1 Number of SNPs with estimated MAF larger than 2% using a particular method (row) within each bin (column) defined by average sequence depth across individuals.

From: Estimation of allele frequency and association mapping using next-generation sequencing data

  0.5×-3× 3×-6× 6×-9× 9×-12× 12×-25×
ML (unknown) 18324 12564 9102 6778 11862
ML (known) 15282 11482 8742 6651 11810
Call NF 123546 63415 19516 9695 13035
Call F 391488 21511 10018 7145 12026