Table 1 Number of SNPs with estimated MAF larger than 2% using a particular method (row) within each bin (column) defined by average sequence depth across individuals.
From: Estimation of allele frequency and association mapping using next-generation sequencing data
|  | 0.5×-3× | 3×-6× | 6×-9× | 9×-12× | 12×-25× |
|---|---|---|---|---|---|
ML (unknown) | 18324 | 12564 | 9102 | 6778 | 11862 |
ML (known) | 15282 | 11482 | 8742 | 6651 | 11810 |
Call NF | 123546 | 63415 | 19516 | 9695 | 13035 |
Call F | 391488 | 21511 | 10018 | 7145 | 12026 |