Skip to main content

Table 2 CPU running time (in seconds) required for flux coupling analysis of the benchmark networks when CLP [32] is used as the LP solver

From: FFCA: a feasibility-based method for flux coupling analysis of metabolic networks

 

no. of unblocked reactions

MMB-FCA

EFP-FCA

FCF

W-FCF

WR-FCF

WRP-FCF

FFCA

ILLUSNET

18

0.01

26.3

0.25

0.14

0.09

0.06

0.06

RBC

38

0.05

152

1.39

0.80

0.68

0.64

0.62

EC core

63

0.22

585

6.58

3.03

3.13

2.19

2.15

H. pylori

217

69.8

>1 day

196

83.6

67.0

63.3

60.7

S. cerevisiae

639

>1 day

>1 day

8.5 × 103

4.0 × 103

3.4 × 103

3.3 × 103

3.1 × 103

E. coli (iJR904)

765

>1 day

>1 day

1.2 × 104

7.4 × 103

6.3 × 103

5.9 × 103

5.6 × 103