A mutation degree model for the identification of transcriptional regulatory elements

BMC Bioinformatics

Table 1 The functional elements detected by 7 tools*

Dataset	Binding site	OCW	WeederH	PhyloGibbs	PhyloCon	AlignACE	GLAM2	Weeder	Ref.
1	ABRE(ACGTGKC)	+	+	+	-	+	+	+	[18]
	DRE(TACCGACAT)	+	-	-	+	+	+	-	[18]
2	ARF(TGTCTC)	+	+	+	+	+	+	+	[19]
3	ARF(TGTCTC)	+	+	+	+	+	-	+	[19]
4	XBP1BS/P-UPRE/ERSEI(CCACGTCAT)	+	+	+	+	+	-	+	[20]
	P-UPRE/ERSEI(ATTGGN9CCACG)	+	+	+	+	+	+	+	[20]
5	G-box(CACGTG)	-	+	+	+	+	+	+	[21]
6	SAUR(CATATG)	+	+	-	-	-	+	+	[22]
7	ABRE3(CAACGTG)	+	+	+	-	-	+	-	[22]
	extA(AACGTGT)	+	+	-	-	-	+	-	[22]

* Only those elements already reported in literatures are listed. '+' indicates successful detection, '-' means failed detection.

ISSN: 1471-2105