Table 2 The big scale and final selection orders of the real linkage data analysis
From: Network-based group variable selection for detecting expression quantitative trait loci (eQTL)
Network 1 | Marker sets 1 | Marker sets 2 | ||||
|---|---|---|---|---|---|---|
Trt/Gene | Big Scale NGVS | Big Scale SinTrt | Final Selection NGVS | Big Scale NGVS | Big Scale SinTrt | Final Selection NGVS |
1/Cldn4 | 2, 16, 11 | 4, 2, 7 | 15, 16, 18, 161, 114 | 3, 27, 20 | 23, 5, 3 | 15, 16, 17, 157, 114 |
2/Lor | 3, 2, 11 | 10, 1, 4 | 33, 16, 17, 18, 113 | 3, 6, 18 | 18, 14, 13 | 16, 17, 33, 107, 14 |
3/Doc2b | 2, 6, 7 | 11, 5, 1 | 16, 18, 17, 70, 80 | 3, 13, 11 | 13, 3, 23 | 16, 17, 81, 68, 9 |
4/F2rl2 | 2, 8, 6 | 5, 6, 11 | 15, 17, 30, 93, 71 | 3, 14, 18 | 14, 3, 26 | 15, 17, 85, 107, 105 |
5/St8sia5 | 10, 18, 2 | 4, 6, 5 | 107, 106, 180, 16, 70 | 3, 18, 31 | 18, 14, 32 | 16, 107, 106, 180, 100 |
6/Nptx1 | 2, 6, 7 | 10, 4, 5 | 16, 17, 68, 80, 70 | 3, 6, 11 | 3, 13, 18 | 16, 17, 32, 68, 70 |
7/Kcna2 | 2, 6, 18 | 5, 1, 4 | 16, 68, 17, 178, 70 | 3, 31, 6 | 13, 14, 3 | 16, 17, 178, 180, 33 |
8/Rnf17 | 18, 2, 1 | 5, 16, 1 | 183, 16, 9, 180, 184 | 3, 32, 1 | 3, 10, 1 | 16, 17, 14, 183, 2 |
9/Ankrd24 | 2, 3, 11 | 4, 1, 2 | 16, 17, 33, 36, 120 | 3, 6, 13 | 13, 3, 14 | 16, 17, 33, 81, 119 |
10/Gstm7 | 2, 4, 11 | 5, 4, 12 | 16, 45, 113, 128, 17 | 3, 8, 27 | 18, 8, 3 | 16, 45, 17, 157, 113 |
11/Tcfcp2l3 | 2, 12, 6 | 10, 5, 7 | 16, 17, 122, 68, 70 | 3, 18, 21 | 18, 13, 23 | 16, 17, 15, 107, 122 |
12/Stmn3 | 3, 6, 7 | 7, 11, 10 | 36, 68, 81, 80, 32 | 3, 6, 13 | 13, 18, 3 | 16, 17, 32, 81, 36 |
13/Rasgrf1 | 13, 9, 2 | 4, 5, 13 | 131, 94, 17, 15, 96 | 3, 17, 22 | 5, 17, 8 | 15, 101, 131, 17, 102 |
14/Sfrp1 | 10, 3, 2 | 10, 4, 5 | 107, 110, 31, 16, 17 | 3, 18, 27 | 18, 3, 8 | 16, 107, 17, 157, 45 |
15/Ergic1 | 2, 3, 11 | 11, 4, 10 | 16, 17, 30, 33, 113 | 3, 6, 22 | 3, 18, 13 | 16, 17, 33, 131, 135 |
16/Cd33 | 9, 4, 13 | 4, 6, 5 | 96, 44, 131, 15, 41 | 8, 3, 17 | 14, 8, 16 | 44, 15, 41, 43, 101 |
Network 2 | Marker sets 1 | Marker sets 2 | ||||
Trt/Gene | Big Scale NGVS | Big Scale SinTrt | Final Selection NGVS | Big Scale NGVS | Big Scale SinTrt | Final Selection NGVS |
1/Calcrl | 9, 8, 12 | 4, 18, 1 | 101, 85, 122, 178, 121 | 14, 17,31 | 31, 2, 8 | 85, 101, 178, 16, 13 |
2/Ccr5 | 3, 2, 1 | 7, 1, 6 | 34, 15, 16, 35, 33 | 3, 6, 2 | 13, 2, 3 | 15, 16, 34, 10, 154 |
3/Rgs6 | 10, 3, 1 | 4, 10, 8 | 105, 107, 103, 37, 2 | 18, 23, 1 | 18, 9, 27 | 105,141, 107, 103, 106 |
4/Rps6ka4 | 2, 4, 12 | 6, 5, 9 | 15, 30, 16, 27, 14 | 3, 5, 17 | 5, 17, 3 | 15, 16, 30, 14, 28 |
5/Cysltr1 | 5, 3, 6 | 4, 5, 13 | 61, 57, 58, 33, 68 | 6, 17, 23 | 8, 13, 23 | 33, 34, 32, 100, 101 |
6/P2ry12 | 6, 3, 18 | 4, 8, 6 | 68, 31, 178, 40, 85 | 6, 31, 3 | 14, 25, 8 | 31, 178, 16, 68, 13 |
7/Rassf1 | 6, 3, 10 | 10, 11, 4 | 70, 68, 32, 107, 120 | 3, 6, 11 | 3, 18, 5 | 16, 14, 17, 32, 70 |
8/Rgs3 | 9, 2, 13 | 11, 5, 12 | 101, 16, 30, 26, 95 | 17, 3, 14 | 17, 3, 2 | 101, 16, 100, 85, 135 |
9/Apln | 6, 2, 3 | 10, 7, 6 | 68, 16, 17, 70, 71 | 3, 11, 18 | 18, 13, 3 | 16, 68, 17, 70, 107 |
10/Dok4 | 15, 9, 6 | 15, 11, 4 | 154, 153, 152, 96, 68 | 26, 3, 17 | 26, 13, 5 | 154, 153, 152, 15, 101 |
11/Lphn1 | 15, 6, 8 | 8, 6, 10 | 154, 71, 156, 68, 88 | 3, 26, 14 | 14, 26, 6 | 16, 154, 156, 85, 17 |
12/Kcnq1 | 9, 15, 3 | 5, 3, 7 | 95, 157, 40, 39, 108 | 27, 3, 7 | 7, 27, 3 | 157, 16, 40, 13, 17 |
13/Gabbr1 | 4, 2, 13 | 4, 13, 12 | 44, 16, 30, 41, 45 | 3, 17, 14 | 8, 5, 3 | 16, 100, 85, 44, 41 |
14/Gnai1 | 9, 17, 6 | 9, 19, 17 | 101, 172, 170, 70, 51 | 17, 5, 9 | 17, 29,33 | 101, 30, 26, 27, 29 |
15/Rgs3(2) | 18, 6, 12 | 5, 10, 1 | 184, 68, 70, 178, 179 | 31, 32,11 | 14, 18,17 | 178, 184, 68, 70, 85 |
16/1200007 D18Rik | 6, 10, 3 | 10, 5, 1 | 68, 108, 107, 109, 70 | 23, 3, 18 | 18, 23,13 | 140, 16, 17, 15, 107 |
17/Cxcr3 | 6, 13, 14 | 6, 11, 4 | 68, 131, 135, 149, 15 | 3, 31, 22 | 13, 3, 11 | 15, 17, 178, 131, 135 |