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Table 1 Measures

From: Unraveling gene regulatory networks from time-resolved gene expression data -- a measures comparison study

MEASURE "SIMPLE" (PAIRWISE) CONDITIONAL PARTIAL
Euclidean distance μ EC , [63] - -
Ls Norm (here s = 10) μ L , [64] (in literature s = 3) - -
Manhattan distance μ MA , [64] - -
dynamic time warping distance μ W , [43] - -
Pearson's correlation μ P , [65] , [22] (*) , [23]
Spearman's correlation μ S , [66] - -
Kendall's correlation μ K , [67] - -
mutual information μ I , [66] , [25] (new)
coarse-grained information rate , [52] (*) , [52] (*) -
Granger causality index μ G , [68] , [34] , [34]
symbol sequence similarity , [38] (*) - -
mutual information of symbol sequence , [38] (*) - -
mean of symbol sequence similarity and μI , [38] (*) - -
conditional entropy of symbol sequence - , [38] (*) -
  1. This table summarizes all measures of interaction included in this study. Those are marked by (*) which, to our knowledge, have not been applied to gene expression before.