Table 4 A fragment of the text output of EMBOSS Matcher (see Figure 7)

# Program: matcher

# Rundate: Tue 2 Nov 2010 15:50:56

# Commandline: matcher

# -asequence tsw:hba_human

# -bsequence tsw:hbb_human

# -outfile/panfs/tmp/pipeline-edu/pipelnvr/2010November02_15h50m48s631ms/Matcher_1.Output-1.matcher

# Align_format: markx0

# Report_file:/panfs/tmp/pipeline-edu/pipelnvr/2010November02_15h50m48s631ms/Matcher_1.Output-1.matcher

#########################################

#=======================================

#

# Aligned_sequences: 2

# 1: HBA_HUMAN

# 2: HBB_HUMAN

# Matrix: EBLOSUM62

# Gap_penalty: 14

# Extend_penalty: 4