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Table 4 The performance of our model and the model using the contact number

From: Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature

 

Bound dataset

Unbound dataset

Model

AUC

F

ACC

SN

SP

AUC

F

ACC

SN

SP

Contact Number

0.565

0.188

0.621

0.468

0.638

0.619

0.241

0.573

0.601

0.558

ARD

0.589

0.206

0.620

0.487

0.633

0.627

0.243

0.585

0.578

0.588

CF+CN

0.618

0.212

0.670

0.444

0.695

0.649

0.259

0.631

0.572

0.634

CF+ARD

0.633

0.227

0.672

0.490

0.692

0.654

0.256

0.608

0.601

0.606

CF+ARD+CN

0.623

0.215

0.654

0.481

0.6717

0.646

0.243

0.593

0.587

0.589

  1. Contact Number and ARD mean the models using the contact number and ARD. CF+CN represents the model based on the surface patch by combining the conventional features and contact number; CF+ARD represents our model based on the thick surface patch by combining the conventional features and ARD. CF+ARD+CN means the altered edition of our method that incorporates the contact number.
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BMC Bioinformatics

ISSN: 1471-2105

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