Table 5 The Summery of the test results of VDGA_Decomp_3 method
From: Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment
Name of Experiment | Sequence Number | Sequence Length | With WSPM | ||||
|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Best Score | Avg. Score | Std | Corresponding BAliscore |
Ref. 1 | 1idy | 5 | 58 | 69.45 | 53.21 | 4.56 | 0.573 |
| Â | 1tvxA | 4 | 69 | 34.98 | 21.32 | 7.91 | 0.267 |
| Â | 1uky | 4 | 220 | 9.039 | -25.48 | 19.30 | 0.449 |
| Â | Kinase | 5 | 276 | -90.18 | -91.90 | 1.46 | 0.545 |
| Â | 1ped | 3 | 374 | 41.21 | 25.91 | 8.98 | 0.482 |
| Â | 2myr | 4 | 474 | -80.324 | -82.725 | 3.26 | 0.359 |
| Â | 1ycc | 4 | 116 | -18.313 | -32.67 | 9.21 | 0.755 |
| Â | 3cyr | 4 | 109 | 21.6 | 14.56 | 4.85 | 0.821 |
| Â | 1ad2 | 4 | 213 | 59.61 | 43.67 | 6.98 | 0.941 |
| Â | 1ldg | 4 | 675 | 89.21 | 51.81 | 7.91 | 0.906 |
| Â | 1fieA | 5 | 442 | 236.42 | 235.84 | 0.47 | 0.930 |
| Â | 1sesA | 5 | 63 | 283.20 | 275.60 | 5.41 | 0.962 |
| Â | 1krn | 4 | 82 | 70.21 | 62.45 | 1.34 | 0.960 |
| Â | 2fxb | 5 | 63 | 141.78 | 141.78 | 0 | 0.978 |
| Â | 1amk | 5 | 258 | 105.89 | 78.31 | 12.21 | 0.984 |
| Â | 1ar5A | 4 | 203 | 61.34 | 34.56 | 6.78 | 0.938 |
| Â | 1gpb | 5 | 828 | 847.84 | 846.94 | 0.94 | 0.984 |
| Â | 1taq | 5 | 928 | 612.66 | 608.22 | 5.10 | 0.959 |
Ref. 2 | 1aboA | 15 | 80 | -234.25 | -278.37 | 35.77 | 0.691 |
| Â | 1idy | 19 | 60 | 516.31 | 498.62 | 11.32 | 0.992 |
| Â | 1csy | 19 | 99 | -51.203 | -59.42 | 6.61 | 0.885 |
| Â | 1r69 | 20 | 76 | 18.728 | 10.32 | 8.52 | 0.834 |
| Â | 1tvxA | 16 | 69 | 387.32 | 384.51 | 1.69 | 0.974 |
| Â | 1tgxA | 19 | 71 | 367.42 | 342.23 | 27.92 | 0.878 |
| Â | 1ubi | 19 | 60 | 48.14 | 22.39 | 18.85 | 0.778 |
| Â | 1wit | 20 | 106 | -102.45 | -113.59 | 8.83 | 0.815 |
| Â | 2trx | 19 | 94 | 957.92 | 945.45 | 8.01 | 0.986 |
| Â | 1sbp | 16 | 262 | -34.26 | 45.66 | 8.49 | 0.772 |
| Â | 1havA | 16 | 242 | 227.25 | 147.09 | 52.73 | 0.846 |
| Â | 1uky | 23 | 225 | 69.57 | 42.91 | 20.69 | 0.891 |
| Â | 2hsdA | 20 | 255 | -309.64 | -355.36 | 32.31 | 0.829 |
| Â | 2pia | 16 | 294 | -53.76 | -75.84 | 14.46 | 0.850 |
| Â | 3grs | 15 | 237 | -136.70 | -164.49 | 25.07 | 0.751 |
| Â | Kinase | 18 | 287 | -180.11 | -195.82 | 18.76 | 0.888 |
| Â | 1ajsA | 18 | 389 | 2011.39 | 1958.0 | 39.43 | 0.905 |
| Â | 1cpt | 15 | 434 | -325.41 | -413.98 | 68.15 | 0.812 |
| Â | 1lvl | 23 | 473 | -688.34 | -810.04 | 73.21 | 0.819 |
| Â | 1pamA | 18 | 511 | -941.56 | -1012.69 | 69.29 | 0.863 |
| Â | 1ped | 18 | 388 | 2003.19 | 1996.74 | 6.95 | 0.947 |
| Â | 2myr | 17 | 482 | 14123.57 | 14115.91 | 20.69 | 0.830 |
| Â | 4enl | 17 | 440 | 1329.23 | 1248.89 | 48.67 | 0.889 |
Ref. 3 | 1idy | 27 | 60 | -496.91 | -554.09 | 35.87 | 0.599 |
| Â | 1r69 | 23 | 78 | -1081.08 | -1124.14 | 29.22 | 0.733 |
| Â | 1ubi | 22 | 97 | -871.85 | -960.94 | 58.08 | 0.414 |
| Â | 1wit | 19 | 102 | -241.51 | -309.58 | 38.91 | 0.873 |
| Â | 1uky | 24 | 220 | -3181.7 | -3308.02 | 113.83 | 0.481 |
| Â | kinase | 18 | 287 | -153.90 | -213.56 | 33.55 | 0.890 |
| Â | 1ajsA | 28 | 396 | -3136.73 | -3463.15 | 203.97 | 0.453 |
| Â | 1pamA | 19 | 511 | -1843.03 | -2015.55 | 127.14 | 0.788 |
| Â | 1ped | 21 | 388 | -411.75 | -457.17 | 48.81 | 0.893 |
| Â | 2myr | 21 | 482 | -5523.14 | -5801.53 | 305.24 | 0.651 |
| Â | 4enl | 19 | 427 | 162.46 | 121.04 | 37.29 | 0.866 |
Ref. 4 | 1dynA | 6 | 848 | -101073.19 | -101151.87 | 41.21 | 0.033 |
| Â | Kinase2 | 7 | 468 | -23090.7 | -23051 | 23.12 | 0.542 |
Ref. 5 | 2cba | 8 | 328 | -755.07 | -781.91 | 24.65 | 0.835 |
| Â | S51 | 15 | 301 | -1657.26 | 1821.16 | 103.23 | 0.743 |