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Table 5 The Summery of the test results of VDGA_Decomp_3 method

From: Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment

Name of Experiment Sequence Number Sequence Length With WSPM
     Best Score Avg. Score Std Corresponding BAliscore
Ref. 1 1idy 5 58 69.45 53.21 4.56 0.573
  1tvxA 4 69 34.98 21.32 7.91 0.267
  1uky 4 220 9.039 -25.48 19.30 0.449
  Kinase 5 276 -90.18 -91.90 1.46 0.545
  1ped 3 374 41.21 25.91 8.98 0.482
  2myr 4 474 -80.324 -82.725 3.26 0.359
  1ycc 4 116 -18.313 -32.67 9.21 0.755
  3cyr 4 109 21.6 14.56 4.85 0.821
  1ad2 4 213 59.61 43.67 6.98 0.941
  1ldg 4 675 89.21 51.81 7.91 0.906
  1fieA 5 442 236.42 235.84 0.47 0.930
  1sesA 5 63 283.20 275.60 5.41 0.962
  1krn 4 82 70.21 62.45 1.34 0.960
  2fxb 5 63 141.78 141.78 0 0.978
  1amk 5 258 105.89 78.31 12.21 0.984
  1ar5A 4 203 61.34 34.56 6.78 0.938
  1gpb 5 828 847.84 846.94 0.94 0.984
  1taq 5 928 612.66 608.22 5.10 0.959
Ref. 2 1aboA 15 80 -234.25 -278.37 35.77 0.691
  1idy 19 60 516.31 498.62 11.32 0.992
  1csy 19 99 -51.203 -59.42 6.61 0.885
  1r69 20 76 18.728 10.32 8.52 0.834
  1tvxA 16 69 387.32 384.51 1.69 0.974
  1tgxA 19 71 367.42 342.23 27.92 0.878
  1ubi 19 60 48.14 22.39 18.85 0.778
  1wit 20 106 -102.45 -113.59 8.83 0.815
  2trx 19 94 957.92 945.45 8.01 0.986
  1sbp 16 262 -34.26 45.66 8.49 0.772
  1havA 16 242 227.25 147.09 52.73 0.846
  1uky 23 225 69.57 42.91 20.69 0.891
  2hsdA 20 255 -309.64 -355.36 32.31 0.829
  2pia 16 294 -53.76 -75.84 14.46 0.850
  3grs 15 237 -136.70 -164.49 25.07 0.751
  Kinase 18 287 -180.11 -195.82 18.76 0.888
  1ajsA 18 389 2011.39 1958.0 39.43 0.905
  1cpt 15 434 -325.41 -413.98 68.15 0.812
  1lvl 23 473 -688.34 -810.04 73.21 0.819
  1pamA 18 511 -941.56 -1012.69 69.29 0.863
  1ped 18 388 2003.19 1996.74 6.95 0.947
  2myr 17 482 14123.57 14115.91 20.69 0.830
  4enl 17 440 1329.23 1248.89 48.67 0.889
Ref. 3 1idy 27 60 -496.91 -554.09 35.87 0.599
  1r69 23 78 -1081.08 -1124.14 29.22 0.733
  1ubi 22 97 -871.85 -960.94 58.08 0.414
  1wit 19 102 -241.51 -309.58 38.91 0.873
  1uky 24 220 -3181.7 -3308.02 113.83 0.481
  kinase 18 287 -153.90 -213.56 33.55 0.890
  1ajsA 28 396 -3136.73 -3463.15 203.97 0.453
  1pamA 19 511 -1843.03 -2015.55 127.14 0.788
  1ped 21 388 -411.75 -457.17 48.81 0.893
  2myr 21 482 -5523.14 -5801.53 305.24 0.651
  4enl 19 427 162.46 121.04 37.29 0.866
Ref. 4 1dynA 6 848 -101073.19 -101151.87 41.21 0.033
  Kinase2 7 468 -23090.7 -23051 23.12 0.542
Ref. 5 2cba 8 328 -755.07 -781.91 24.65 0.835
  S51 15 301 -1657.26 1821.16 103.23 0.743