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Table 7 Experiments on Reference 2 Datasets of BAliBase

From: Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment

Reference No. Name of Dataset PRRP    CLUSTALX    SAGA    DIALIGN    HMMT    SB_PIMA    ML_PIMA    MULTALIGN    PILEUP8    RBT-GA    VDGA_Decomp_2    VDGA_Decomp_3    VDGA_Decomp_4
Ref. 2 1aboA 0.256    0.65    0.489    0.384    0.724    0.391    0.22    0.528    0.000    0.812    0.723    0.791    0.679
  1idy 0.37    0.515    0.548    0.000    0.353    0.000    0.000    0.401    0.000    0.997    0.981    0.992    0.992
  1csy 0.35    0.154    0.154    0.000    0.000    0.000    0.000    0.154    0.114    0.735    0.731    0.885    0.831
  1r69 0.675    0.675    0.475    0.675    0.000    0.675    0.675    0.675    0.45    0.9    0.859    0.934    0.874
  1tvxA 0.207    0.552    0.448    0.000    0.276    0.241    0.241    0.138    0.345    0.891    0.944    0.974    0.944
  1tgxA 0.695    0.727    0.773    0.63    0.622    0.678    0.543    0.696    0.318    0.835    0.867    0.878    0.850
  1ubi 0.056    0.482    0.492    0.000    0.053    0.129    0.129    0.000    0.000    0.795    0.732    0.778    0.794
  1wit 0.76    0.557    0.694    0.724    0.641    0.469    0.463    0.5    0.476    0.825    0.875    0.815    0.774
  2trx 0.87    0.87    0.87    0.734    0.739    0.85    0.702    0.87    0.87    0.982    0.959    0.986    0.986
  1sbp 0.231    0.217    0.374    0.043    0.214    0.043    0.054    0.186    0.177    0.778    0.782    0.772    0.778
  1havA 0.52    0.48    0.448    0.000    0.194    0.259    0.238    0.5    0.493    0.792    0.884    0.846    0.884
  1uky 0.351    0.656    0.476    0.216    0.395    0.256    0.306    0.585    0.562    0.625    0.845    0.891    0.872
  2hsdA 0.404    0.484    0.498    0.262    0.423    0.39    0.561    0.593    0.278    0.745    0.856    0.829    0.742
  2pia 0.767    0.752    0.763    0.612    0.647    0.73    0.695    0.765    0.766    0.730    0.847    0.850    0.839
  3grs 0.363    0.192    0.282    0.350    0.141    0.183    0.211    0.192    0.159    0.755    0.717    0.751    0.781
  Kinase 0.896    0.848    0.867    0.692    0.749    0.755    0.651    0.83    0.799    0.712    0.825    0.888    0.812
  1ajsA 0.227    0.324    0.311    0.000    0.242    0.000    0.000    0.311    0.227    0.892    0.906    0.905    0.902
  1cpt 0.821    0.66    0.776    0.425    0.388    0.184    0.277    0.777    0.688    0.584    0.869    0.812    0.853
  1lvl 0.772    0.746    0.726    0.783    0.539    0.62    0.688    0.614    0.678    0.567    0.803    0.819    0.816
  1pamA 0.711    0.761    0.623    0.576    0.53    0.393    0.386    0.566    0.702    0.66    0.857    0.863    0.853
  1ped 0.881    0.834    0.835    0.773    0.696    0.651    0.647    0.741    0.749    0.78    0.935    0.947    0.943
  2myr 0.582    0.904    0.825    0.84    0.443    0.727    0.75    0.894    0.786    0.675    0.806    0.830    0.808
  4enl 0.668    0.375    0.739    0.122    0.213    0.096    0.092    0.384    0.224    0.812    0.890    0.889    0.899
Average Score 0.541    0.583    0.586    0.384    0.401    0.379    0.371    0.517    0.429    0.777    0.848    0.866    0.849