Table 4 Assembly results for E.coli
From: Parallelized short read assembly of large genomes using de Bruijn graphs
PASHA | Velvet | ABySS | SOAPdenovo | |
|---|---|---|---|---|
no. of scaffolds | 64 | 179 | 124 | 166 |
NG50 | 164,390 | 95,486 | 96,308 | 105,781 |
NG80 | 63,677 | 43,814 | 43,972 | 41,901 |
max | 297,975 | 268,283 | 268,372 | 221,692 |
mean | 71,305 | 25,465 | 37,381 | 27,406 |
genome coverage | 97.44% | 98.67% | 95.58% | 97.97% |
incorrect contigs (mean) | 8(6,145) | 5(9,909) | 5(39,765) | 8(7,202) |
time (in seconds) | 325 | 490 | 595 | 533 |