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Table 4 Assembly results for E.coli

From: Parallelized short read assembly of large genomes using de Bruijn graphs

  PASHA Velvet ABySS SOAPdenovo
no. of scaffolds 64 179 124 166
NG50 164,390 95,486 96,308 105,781
NG80 63,677 43,814 43,972 41,901
max 297,975 268,283 268,372 221,692
mean 71,305 25,465 37,381 27,406
genome coverage 97.44% 98.67% 95.58% 97.97%
incorrect contigs (mean) 8(6,145) 5(9,909) 5(39,765) 8(7,202)
time (in seconds) 325 490 595 533
  1. PASHA uses the parameters "k = 31", Velvet uses "k = 31, -exp_cov = auto, -cov_cutoff = auto", ABySS uses "k = 33, n = 10" and SOAPdenvo uses "k = 23, insert_length = 215".