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Table 1 Proportion of CNVs called by Pinto et al. detected by the different methods used

From: CNV-WebStore: Online CNV Analysis, Storage and Interpretation

  Pinto et al.
  Deletions (n = 378) Duplications (n = 130) Overall (n = 508)
Algorithm % P-Val % P-Val % P-Val
2/3 Vote 81.5   69.6   74.4  
QuantiSNP 79.0 0.19 66.0 0.26 71.3 0.13
PennCNV 80.0 0.3 75.2 0.16 77.2 0.15
VanillaICE 83.0 0.31 55.1 0.0073 66.3 0.0023
  1. Results are averaged over 181 HapMap samples. P-values are calculated using a one-tailed z-test for difference between proportions, comparing the majority vote against each separate method.
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BMC Bioinformatics

ISSN: 1471-2105

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