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Table 1 Proportion of CNVs called by Pinto et al. detected by the different methods used

From: CNV-WebStore: Online CNV Analysis, Storage and Interpretation

 

Pinto et al.

 

Deletions (n = 378)

Duplications (n = 130)

Overall (n = 508)

Algorithm

%

P-Val

%

P-Val

%

P-Val

2/3 Vote

81.5

 

69.6

 

74.4

 

QuantiSNP

79.0

0.19

66.0

0.26

71.3

0.13

PennCNV

80.0

0.3

75.2

0.16

77.2

0.15

VanillaICE

83.0

0.31

55.1

0.0073

66.3

0.0023

  1. Results are averaged over 181 HapMap samples. P-values are calculated using a one-tailed z-test for difference between proportions, comparing the majority vote against each separate method.
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BMC Bioinformatics

ISSN: 1471-2105

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