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Table 4 AUC values of AG-QP360 and AG-CTF on the artificial negative data sets

From: Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation

Organism

Method

1-mer

2-mer

3-mer

E. coli

AG-QP360

0.966

0.932

0.914

 

AG-CTF

0.957

0.936

-

S. cerevisiae

AG-QP360

0.969

0.931

0.918

 

AG-CTF

0.956

0.936

-

  1. -: The method has no power to discriminate positive PPIs from this type of negative PPIs.
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BMC Bioinformatics

ISSN: 1471-2105

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