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Table 1 10 External ontologies used for the MPO test-run

From: Improving ontologies by automatic reasoning and evaluation of logical definitions

Ontology Number classes in Ontology Fraction of terms referenced in logical definitions
Chemical Entities of Biological Interest 44,843 2.71 %
Gene Ontology 35,090 4.35 %
Protein Ontology 26,727 0.18 %
Molecule Role Ontology 9,530 0.66 %
Uber-Anatomy (UBERON) 8,111 17.70 %
BRENDA Tissue Ontology 4,975 0.28 %
Adult Mouse Anatomical Dictionary 2,994 43.05 %
Phenotype, Attribute and Trait Ontology 2,283 23.87 %
Cell Ontology 1,510 30.20 %
Mouse Pathology 643 18.97 %
Total 140,453 7.45 %
  1. Less than 10 % of the terms of the external ontologies are used by the logical definitions of the MPO terms. "Fraction of terms referenced in logical definitions" denotes the percentage of terms in the ontology that are members of the induced ancestral graph and are used by the logical definitions of the MPO terms.