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Table 2 Top hits by PPP in Serratia odorifera 4Rx13 using a query profile for DptD (TIGR03185 family) of the DNA phosphorothioation system, with a modified probability of 0.4.

From: ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process

GI number1 DPT
Genomes2
Total
Genomes3
Score4 Protein Functional Assignment
270263651 66 66 26.26 DptD (DndD) (DNA phosphorothioation)
270263652 59 59 23.48 DptC (DndC) (DNA phosphorothioation)
270263653 32 32 12.73 DptB (DndB) (DNA phosphorothioation)
270263650 19 19 7.56 DptE (DndE) (DNA phosphorothioation)
270263648 16 16 6.37 DptH (DPT-dependent restriction)
270263645 18 20 5.30 DptF (DPT-dependent restriction) (N-terminal)
270263647 15 16 4.97 DptF (DPT-dependent restriction) (C-terminal)
270263646 12 12 4.78 DptG (DPT-dependent restriction)
270263649 7 7 2.79 DGQHR domain protein
  1. 1NCBI GI. 2The number of unique taxa common to the query profile and the target BLAST hit list. 3The total number of unique taxa in encountered where PPP found the optimal depth. 4Score reported by PPP as the negative logarithm of the P-value at the optimal depth, which is lowest that can be obtained from the binomial distribution for any depth.