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Figure 1 | BMC Bioinformatics

Figure 1

From: Exact score distribution computation for ontological similarity searches

Figure 1

Example Computation of simavg. Computation of simavgon a DAG with six nodes. The target set is T= { B , C } (black nodes) and the query set Q= { D , F } (nodes with horizontal lines). The IC value of a node is shown in a small, dashed, attached oval. The most similar terms for D and F are B and C respectively, because IC(B) > IC(A) and IC(C) > IC(B). Therefore, si m a v g ( Q , T ) = s i m ( D , B ) + s i m ( F , C ) 2 = I C ( B ) + I C ( C ) 2 = 2 + 2 . 5 2 . Note that only terms involving nodes in T I M P L = { A , B , C } were considered in the calculation.

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