Figure 6
From: Validating clustering of molecular dynamics simulations using polymer models
Sampled structures from two polymer models. (A) The Rotation Model displays a controlled collapse from a completely extended polymer (t = 1) to a tightly wound helix (t = 1000). (B) The Dynamic Model is a simulated polymer that starts from a random coil configuration and then "folds" into a helix (t = 500) as the temperature of the simulations is lowered. The temperature is then raised for the remainder of the simulation allowing the polymer to "unfold" back to the random coil (t = 1000) conformation.