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Table 5 Comparison of network properties for different model organisms.

From: iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database

a. C. elegans

       

Dataset

n

I

X

C

dav

dvar

dmax

All canon spoke

5368

11848

11720

43

4.45 *

159.29

514

All non-canon spoke

5835

13774

13644

44

4.76

171.17

514

All canon matrix

5368

11848

11720

43

5.42*

210.28

514

LT canon spoke

570

544

498

41

2.59

26.13

92

b. D. melanogaster

       

Dataset

n

I

X

C

dav

dvar

dmax

All canon spoke

9454

36576

36199

178

7.73

160.69

220

All non-canon spoke

11099

46727

46349

178

8.41

191.62

260

All canon matrix

9454

36576

36199

178

7.91

166.84

220

LT canon spoke

1496

3543

3371

153

4.91

53.90

101

c. E. coli

       

Dataset

n

I

X

C

dav

dvar

dmax

All canon spoke

919

1065

924

109

2.10

0.98

13

All non-canon spoke

919

1065

924

109

2.10

0.98

13

All canon matrix

919

1065

924

109

2.14

1.17

13

LT canon spoke

786

826

783

17

2.08

0.83

11

d. H. sapiens

       

Dataset

n

I

X

C

dav

dvar

dmax

All canon spoke

16320

107257

101792

5021

14.26

837.92

789

All non-canon spoke

18631

119764

114091

5226

13.92

816.91

789

All canon matrix

16320

107257

101792

5021

42.50

8637.40

1145

LT canon spoke

10860

44689

40655

3677

8.84

317.01

445

e. M. musculus

       

Dataset

n

I

X

C

dav

dvar

dmax

All canon spoke

6280

9872

8501

1268

4.13*

144.41

608

All non-canon spoke

6560

10143

8741

1299

4.05

139.00

608

All canon matrix

6280

9872

8501

1268

83.50*

39515.35

1010

LT canon spoke

4811

5732

4777

865

3.36

112.71

608

f. R. norvegicus

       

Dataset

n

I

X

C

dav

dvar

dmax

All canon spoke

2517

3212

2671

477

3.50

241.61

641

All non-canon spoke

2588

3304

2758

481

3.49

236.32

641

All canon matrix

2517

3212

2671

477

171.95

76175.86

858

LT canon spoke

1786

2263

1811

402

3.07

31.37

117

g. S. cerevisiae

       

Dataset

n

I

X

C

dav

dvar

dmax

All canon spoke

6296

185384

178035

6875

65.43

8208.29

1322

All non-canon spoke

6299

185398

178045

6879

65.40

8206.43

1322

All canon matrix

6296

185384

178035

6875

157.76

51736.61

2292

LT canon spoke

4181

21981

21279

543

10.57

202.12

307

  1. n: number of proteins
  2. I: number of interaction records
  3. X: number of binary interaction records
  4. C: number of n-ary interaction records
  5. dav: average protein degree
  6. dvar: degree variance
  7. dmax: maximum protein degree,
  8. All: both HT and LT data
  9. canon: canonical representation of proteins
  10. spoke: spoke representation of complexes
  11. matrix: matrix representation of complexes
  12. Numbers are for the main seven organisms in iRefIndex