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Table 3 Alignment program run times and overall speedup

From: Accelerated large-scale multiple sequence alignment

Data Set Sequences Avg. Length MUSCLE MUDISC MUFPGA Speedup
Influenza 12,104 1,717 01:25:40 00:20:03 00:02:35 33
HIV 2,144 9,019 02:09:29 01:28:42 00:00:50 154
Corona 400 29,531 03:17:47 02:22:43 00:00:41* 284*
Herpes 142 167,043 136:38:20 52:31:05 00:11:26* 716*
  1. * Estimated
  2. Program run times are in HH:MM:SS.