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Table 3 Alignment program run times and overall speedup

From: Accelerated large-scale multiple sequence alignment

Data Set

Sequences

Avg. Length

MUSCLE

MUDISC

MUFPGA

Speedup

Influenza

12,104

1,717

01:25:40

00:20:03

00:02:35

33

HIV

2,144

9,019

02:09:29

01:28:42

00:00:50

154

Corona

400

29,531

03:17:47

02:22:43

00:00:41*

284*

Herpes

142

167,043

136:38:20

52:31:05

00:11:26*

716*

  1. * Estimated
  2. Program run times are in HH:MM:SS.
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BMC Bioinformatics

ISSN: 1471-2105

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