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Table 11 SP scores for different weights of relative solvent accessibility on the SABmark benchmark. Bold denotes the two best scores, and an extra superscript of star denotes the highest score.

From: MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

w3 0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1
SP 60.553 61.753 63.260 64.171 65.124 65.199 65.249 * 65.037 64.388 63.1882 61.723
  1. The results show that using relative solvent accessibility information (i.e. w3 > 0) always increases the alignment scores over without using it (i.e. w3 = 0). MSACompro yielded the highest accuracy score of ~68.70 when w2 is set to 0.6.