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Table 11 SP scores for different weights of relative solvent accessibility on the SABmark benchmark. Bold denotes the two best scores, and an extra superscript of star denotes the highest score.

From: MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

w3

0

0.1

0.2

0.3

0.4

0.5

0.6

0.7

0.8

0.9

1

SP

60.553

61.753

63.260

64.171

65.124

65.199

65.249 *

65.037

64.388

63.1882

61.723

  1. The results show that using relative solvent accessibility information (i.e. w3 > 0) always increases the alignment scores over without using it (i.e. w3 = 0). MSACompro yielded the highest accuracy score of ~68.70 when w2 is set to 0.6.
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BMC Bioinformatics

ISSN: 1471-2105

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