MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

Table 13 SP scores for different weights for contact map on the BAliBASE3.0 database. Red color highlights the improved scores on each BAliBASE subset. Bold denotes the increased scores.

subset\w_c wc	0	0.1	0.2	0.3	0.4	0.5	0.6	0.7	0.8	0.9	1
RV11	0.6829	0.686	0.686	0.684	0.684	0.683	0.687	0.684	0.687	0.687	0.668
RV12	0.9461	0.946	0.946	0.945	0.946	0.945	0.946	0.945	0.946	0.945	0.944
RV20	0.9297	0.927	0.926	0.926	0.926	0.926	0.926	0.926	0.926	0.927	0.924
RV30	0.865	0.865	0.864	0.864	0.864	0.863	0.863	0.864	0.864	0.865	0.817
RV40	0.928	0.926	0.926	0.924	0.923	0.924	0.924	0.936	0.934	0.933	0.927
RV50	0.9091	0.908	0.910	0.910	0.909	0.909	0.909	0.907	0.907	0.908	0.886

ISSN: 1471-2105