MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

Table 14 TC scores for different weights for contact map on the BAliBASE 3.0 database. Red highlights the improved scores on each BAliBASE subset. Bold denotes the increased scores.

subset\w_c wc	0	0.1	0.2	0.3	0.4	0.5	0.6	0.7	0.8	0.9	1
RV11	0.441	0.445	0.445	0.444	0.444	0.444	0.447	0.447	0.448	0.451	0.417
RV12	0.8669	0.865	0.866	0.866	0.866	0.866	0.867	0.867	0.867	0.865	0.858
RV20	0.482	0.479	0.473	0.460	0.457	0.462	0.453	0.453	0.457	0.453	0.419
RV30	0.607	0.605	0.594	0.594	0.592	0.592	0.591	0.591	0.593	0.592	0.415
RV40	0.67	0.667	0.667	0.661	0.659	0.662	0.662	0.682	0.682	0.681	0.642
RV50	0.625	0.621	0.634	0.633	0.629	0.628	0.631	0.615	0.615	0.603	0.556

ISSN: 1471-2105