MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

Table 16 TC scores scores for different weight combinations (w₁ - amino acid, w₂ - secondary structure, w₃ - solvent accessibility) on the SABmark 1.65 dataset.

w₂\w₁	0	0.1	0.2	0.3	0.4	0.5	0.6	0.7	0.8	0.9	1
0	41.012	42.447	44.038	45.031	45.184	45.442	44.870	43.943	43.035	41.300	39.948
0.1	42.558	44.147	45.596	46.863	47.043	46.910	46.676	45.333	44.390	42.643
0.2	43.915	45.678	47.270	47.927	48.619	48.080	47.584	47.002	45.262
0.3	45.582	46.768	48.116	48.660	48.905	48.660	48.371	47.442
0.4	46.104	47.340	48.473	48.889	49.508 ¹	49.1589 ²	48.754
0.5	46.440	47.809	48.210	49.078	49.222 ³	49.005
0.6	46.577	47.619	48.487	48.797	48.745
0.7	46.147	47.579	48.083	48.352
0.8	45.714	46.898	47.142
0.9	44.442	45.492
1	43.385

Bold denotes the top 3 highest scores. The highest score is indicated by a superscript of 1, the second highest by a superscript of 2, and the third by a superscript of 3. The table only shows the values of w₁ and w₂ because w₃ can be inferred by 1 - w₁ - w₂.

ISSN: 1471-2105