MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

Table 18 TC scores for different contact map weight w_c on the BAliBASE3.0 database while keeping the weights for amino acid, secondary structure, solvent accessibility to 0.4, 0.5, and 0.1, respectively.

subset\the weight w_c	0	0.1	0.2	0.3	0.4	0.5	0.6	0.7	0.8	0.9	1
RV11	0.470	0.472	0.471	0.469	0.468	0.468	0.468	0.468	0.475	0.471	0.450
RV12	0.870	0.870	0.869	0.872	0.872	0.871	0.871	0.872	0.870	0.869	0.863
RV20	0.481	0.465	0.460	0.478	0.478	0.477	0.477	0.472	0.471	0.472	0.468
RV30	0.609	0.591	0.590	0.588	0.589	0.588	0.588	0.587	0.589	0.586	0.434
RV40	0.628	0.626	0.624	0.625	0.625	0.625	0.625	0.624	0.6249	0.644	0.6124
RV50	0.601	0.595	0.60071	0.601	0.596	0.596	0.586	0.625	0.63643	0.634	0.55

ISSN: 1471-2105